RNA-seq of riverbank sediment - SRA

SRX22006838: RNA-seq of riverbank sediment
1 ILLUMINA (Illumina NovaSeq 6000) run: 96.3M spots, 28.9G bases, 9Gb downloads

Design: Riverbank sediment samples were collected in April 2022 from four points along the riverbank of the Denmark River, Western Australia. Samples were packed into sterile 50 ml conical tubes and stored between -30C and -15C until transported to a -80C freezer for long-term storage. Total RNA was extracted from the samples using the RNeasy PowerSoil Total RNA Kit (Qiagen) as per the manufacturers instructions. Libraries were constructed using the Illumina Stranded Total RNA library preparation protocol and rRNA was removed using the Ribo-Zero Plus rRNA depletion kit (Illumina). Libraries were sequenced on the Illumina NovaSeq 6000 platform (paired-end, 150 bp). Library preparation and sequencing was performed by the Australian Genome Research Facility (AGRF). Data generated as part of the study Australian terrestrial environments harbour extensive RNA virus diversity.

Submitted by: The University of Sydney

Study: Australian terrestrial environments harbour extensive RNA virus diversity

PRJNA981585 • SRP464815 • All experiments • All runs

show Abstracthide Abstract

Meta-transcriptomic sequencing of Australian soil and sediment samples reveal remarkable viral diversity, reflecting the diversity of Australian plants and soil-dwelling invertebrates and microbes.

Sample:

SAMN35681329 • SRS19081501 • All experiments • All runs

Organism: sediment metagenome

Library:

Name: DRCP2A

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: other

Layout: PAIRED

Runs: 1 run, 96.3M spots, 28.9G bases, 9Gb

Run	# of Spots	# of Bases	Size	Published
SRR26298346	96,265,016	28.9G	9Gb	2024-02-21

ID:: 29920051

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